Research Article
Year 2023,
, 130 - 142, 26.03.2023
Abstract
References
- [1] Gambette P., Berry V., Paul C., The structure of level-k phylogenetic networks, Annual Symposium on Combinatorial Pattern Matching Springer, Berlin, Heidelberg, (2009, June). 289-300.
- [2] Jansson J., Sung W. K., Inferring a level-1 phylogenetic network from a dense set of rooted triplets, Theoretical Computer Science, 363(1) (2006) 60-68.
- [3] Van Iersel L., Keijsper J., Kelk S., Stougie L., Hagen F., Boekhout T., Constructing level-2 phylogenetic networks from triplets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(4) (2009) 667-681.
- [4] Gross E., Long C., Distinguishing phylogenetic networks. SIAM Journal on Applied Algebra and Geometry, 2(1) (2018) 72-93.
- [5] Huber K. T., Moulton V., Semple C., Wu T., Quarnet inference rules for level-1 networks, Bulletin of Mathematical Biology, 80(8) (2018) 2137-2153.
- [6] Huebler S., Morris R., Rusinko J., Tao Y. Constructing semi-directed level-1 phylogenetic networks from quarnets, (2019) arXiv preprint arXiv:1910.00048.
- [7] Solís-Lemus C., Ané C., Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting, PLoS genetics, 12(3) (2016) e1005896.
Year 2023,
, 130 - 142, 26.03.2023
Abstract
Phylogenetic trees describe evolution but due to hybridization events, recombination events or lateral gene transfer, it can be represented as a phylogenetic network. In phylogenetic networks, some of the branches of tree combine and create a reticulation node. Level of a network is decided to look at how many nodes in a connected component in a network. In this research, Int this paper, the structure of directed and undirected level-2 networks and how the can be decomposed into level-2 generators is studied..
References
- [1] Gambette P., Berry V., Paul C., The structure of level-k phylogenetic networks, Annual Symposium on Combinatorial Pattern Matching Springer, Berlin, Heidelberg, (2009, June). 289-300.
- [2] Jansson J., Sung W. K., Inferring a level-1 phylogenetic network from a dense set of rooted triplets, Theoretical Computer Science, 363(1) (2006) 60-68.
- [3] Van Iersel L., Keijsper J., Kelk S., Stougie L., Hagen F., Boekhout T., Constructing level-2 phylogenetic networks from triplets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(4) (2009) 667-681.
- [4] Gross E., Long C., Distinguishing phylogenetic networks. SIAM Journal on Applied Algebra and Geometry, 2(1) (2018) 72-93.
- [5] Huber K. T., Moulton V., Semple C., Wu T., Quarnet inference rules for level-1 networks, Bulletin of Mathematical Biology, 80(8) (2018) 2137-2153.
- [6] Huebler S., Morris R., Rusinko J., Tao Y. Constructing semi-directed level-1 phylogenetic networks from quarnets, (2019) arXiv preprint arXiv:1910.00048.
- [7] Solís-Lemus C., Ané C., Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting, PLoS genetics, 12(3) (2016) e1005896.
There are 7 citations in total.
Details
| Primary Language | English |
|---|---|
| Subjects | Structural Biology, Mathematical Sciences, Statistics |
| Journal Section | Natural Sciences |
| Authors | |
| Publication Date | March 26, 2023 |
| Submission Date | February 10, 2022 |
| Acceptance Date | November 13, 2022 |
| Published in Issue | Year 2023 |