The Structure of Level-2 Semi-directed Binary Phylogenetic Networks

Nihan Özbaltan

doi:10.17776/csj.1071349

EN

The Structure of Level-2 Semi-directed Binary Phylogenetic Networks

Abstract

Phylogenetic trees describe evolution but due to hybridization events, recombination events or lateral gene transfer, it can be represented as a phylogenetic network. In phylogenetic networks, some of the branches of tree combine and create a reticulation node. Level of a network is decided to look at how many nodes in a connected component in a network. In this research, Int this paper, the structure of directed and undirected level-2 networks and how the can be decomposed into level-2 generators is studied..

Keywords

References

[1] Gambette P., Berry V., Paul C., The structure of level-k phylogenetic networks, Annual Symposium on Combinatorial Pattern Matching Springer, Berlin, Heidelberg, (2009, June). 289-300.
[2] Jansson J., Sung W. K., Inferring a level-1 phylogenetic network from a dense set of rooted triplets, Theoretical Computer Science, 363(1) (2006) 60-68.
[3] Van Iersel L., Keijsper J., Kelk S., Stougie L., Hagen F., Boekhout T., Constructing level-2 phylogenetic networks from triplets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(4) (2009) 667-681.
[4] Gross E., Long C., Distinguishing phylogenetic networks. SIAM Journal on Applied Algebra and Geometry, 2(1) (2018) 72-93.
[5] Huber K. T., Moulton V., Semple C., Wu T., Quarnet inference rules for level-1 networks, Bulletin of Mathematical Biology, 80(8) (2018) 2137-2153.
[6] Huebler S., Morris R., Rusinko J., Tao Y. Constructing semi-directed level-1 phylogenetic networks from quarnets, (2019) arXiv preprint arXiv:1910.00048.
[7] Solís-Lemus C., Ané C., Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting, PLoS genetics, 12(3) (2016) e1005896.

Details

Primary Language

English

Subjects

Structural Biology, Mathematical Sciences, Statistics

Journal Section

Research Article

Authors

Nihan Özbaltan ^*
0000-0003-0191-312X
Türkiye

Publication Date

March 26, 2023

Submission Date

February 10, 2022

Acceptance Date

November 13, 2022

Published in Issue

Year 2023 Volume: 44 Number: 1

DOI

https://doi.org/10.17776/csj.1071349

IZ

https://izlik.org/JA92WX29AC

Cite

RIS / Bibtex

APA

Özbaltan, N. (2023). The Structure of Level-2 Semi-directed Binary Phylogenetic Networks. Cumhuriyet Science Journal, 44(1), 130-142. https://doi.org/10.17776/csj.1071349

AMA

1.Özbaltan N. The Structure of Level-2 Semi-directed Binary Phylogenetic Networks. CSJ. 2023;44(1):130-142. doi:10.17776/csj.1071349

Chicago

Özbaltan, Nihan. 2023. “The Structure of Level-2 Semi-Directed Binary Phylogenetic Networks”. Cumhuriyet Science Journal 44 (1): 130-42. https://doi.org/10.17776/csj.1071349.

EndNote

Özbaltan N (March 1, 2023) The Structure of Level-2 Semi-directed Binary Phylogenetic Networks. Cumhuriyet Science Journal 44 1 130–142.

IEEE

[1]N. Özbaltan, “The Structure of Level-2 Semi-directed Binary Phylogenetic Networks”, CSJ, vol. 44, no. 1, pp. 130–142, Mar. 2023, doi: 10.17776/csj.1071349.

ISNAD

Özbaltan, Nihan. “The Structure of Level-2 Semi-Directed Binary Phylogenetic Networks”. Cumhuriyet Science Journal 44/1 (March 1, 2023): 130-142. https://doi.org/10.17776/csj.1071349.

JAMA

1.Özbaltan N. The Structure of Level-2 Semi-directed Binary Phylogenetic Networks. CSJ. 2023;44:130–142.

MLA

Özbaltan, Nihan. “The Structure of Level-2 Semi-Directed Binary Phylogenetic Networks”. Cumhuriyet Science Journal, vol. 44, no. 1, Mar. 2023, pp. 130-42, doi:10.17776/csj.1071349.

Vancouver

1.Nihan Özbaltan. The Structure of Level-2 Semi-directed Binary Phylogenetic Networks. CSJ. 2023 Mar. 1;44(1):130-42. doi:10.17776/csj.1071349