Research Article

Molecular Docking and Drug-likeness Prediction of New Potent Tubulin Colchicine Binding Site Inhibitors for Potential Antitumor Drug

Volume: 43 Number: 3 September 30, 2022
EN

Molecular Docking and Drug-likeness Prediction of New Potent Tubulin Colchicine Binding Site Inhibitors for Potential Antitumor Drug

Abstract

Cancer is a real public health problem that figures among the main causes of morbidity and mortality in the world. The Colchicine Binding Site (CBS) is an important pocket for potential tubulin polymerization destabilizers. Colchicine binding site inhibitors (CBSI) exhibit their biological effects by inhibiting tubulin assembly and suppressing microtubule formation. In order to identify new potent CBSI, molecular docking and drug likeness prediction were performed. In this context, a collection of 850 similar compounds to combretastatinA-4from PubChem database was docked into the CBS. Out of these, compounds S1 and S2 were found to have highest negative binding energy of -9.462 and -9.017 Kcal/mol respectively. Furthermore, these two compounds were predicted to have satisfying drug likeness properties, indicating that they might be promising lead compounds for further antitumor drug research.

Keywords

References

  1. [1] Üstün E., Şahin N., Molecular Docking Studies of N-Heterocyclic Carbene Molecules with Thioredoxin Reductase and DNA, Cumhuriyet Sci. J., 42(3) (2021) 656-662.
  2. [2] Sung H., Ferlay J., Siegel RL., Laversanne M., Soerjomataram I., Jemal A., Bray F., Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries, CA: Cancer. J. Clin., 71 (3) (2021) 209-249.
  3. [3] International Agency for Research on Cancer, Global cancer observatory, GLOBOCAN 2020. Availabe at https://gco.iarc.fr/. Retrieved September 10, 2021.
  4. [4] Taperaa M., Kekeçmuhammed H., Tüzün B., Sarıpınar E., Koçyiğit UM., Yıldırım E., Doğan M., Zorlu Y. Synthesis, Carbonic Anhydrase Inhibitory Activity, Anticancer Activity and Molecular Docking Studies of New Imidazolyl Hydrazone Derivatives, J. Mol. Struct., 1269 (2022) 133816.
  5. [5] Sarkı G., Tüzün B., Ünlüer D., Kantekin H. Synthesis, characterization, chemical and biological activities of 4-(4-methoxyphenethyl)-5- benzyl-2-hydroxy-2H-1,2,4-triazole-3(4H)-one phthalocyanine derivatives, Inorg. Chim. Acta., Available online 30 July 2022, 121113.
  6. [6] Koçyiğit UM., Doğan M., Muğlu H., Taslimi P., Tüzün B., Yakan H., Bal H., Güzel E., Gülçin I. Determination of biological studies and molecular docking calculations of isatin-thiosemicarbazone hybrid compounds, J. Mol. Struct., 1264 (2022) 133249.
  7. [7] Cutts JH., Beer CT., Noble RL., Biological properties of Vincaleukoblastine, an alkaloid in Vinca rosea Linn, with reference to its antitumor action, Cancer. Res., 20 (1960) 1023–31.
  8. [8] Person F., Wilczak W., Hube-Magg C., Burdelski C., Möller-Koop C., Simon R., Noriega M., Sauter G., Steurer S., Burdak-Rothkamm S., Jacobsen F., Prevalence of βIII-tubulin (TUBB3) expression in human normal tissues and cancers, Tumor. Biol., 39(10) (2017) 1010428317712166.

Details

Primary Language

English

Subjects

Pharmacology and Pharmaceutical Sciences

Journal Section

Research Article

Authors

Amine Abdelazız
0000-0002-4320-2927
Algeria

Naamane Akakba
0000-0003-0021-0334
Algeria

Rym Gouta Demmak
0000-0002-2793-5653
Algeria

Abderrahmane Benseguenı
0000-0003-3467-6749
Algeria

Publication Date

September 30, 2022

Submission Date

January 29, 2022

Acceptance Date

August 27, 2022

Published in Issue

Year 2022 Volume: 43 Number: 3

APA
Mokranı, E. H., Abdelazız, A., Akakba, N., Tenıou, S., Demmak, R. G., & Benseguenı, A. (2022). Molecular Docking and Drug-likeness Prediction of New Potent Tubulin Colchicine Binding Site Inhibitors for Potential Antitumor Drug. Cumhuriyet Science Journal, 43(3), 398-403. https://doi.org/10.17776/csj.1063966

Cited By

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