Öz
Kaynakça
- [1] Gambette P., Berry V., Paul C., The structure of level-k phylogenetic networks, Annual Symposium on Combinatorial Pattern Matching Springer, Berlin, Heidelberg, (2009, June). 289-300.
- [2] Jansson J., Sung W. K., Inferring a level-1 phylogenetic network from a dense set of rooted triplets, Theoretical Computer Science, 363(1) (2006) 60-68.
- [3] Van Iersel L., Keijsper J., Kelk S., Stougie L., Hagen F., Boekhout T., Constructing level-2 phylogenetic networks from triplets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(4) (2009) 667-681.
- [4] Gross E., Long C., Distinguishing phylogenetic networks. SIAM Journal on Applied Algebra and Geometry, 2(1) (2018) 72-93.
- [5] Huber K. T., Moulton V., Semple C., Wu T., Quarnet inference rules for level-1 networks, Bulletin of Mathematical Biology, 80(8) (2018) 2137-2153.
- [6] Huebler S., Morris R., Rusinko J., Tao Y. Constructing semi-directed level-1 phylogenetic networks from quarnets, (2019) arXiv preprint arXiv:1910.00048.
- [7] Solís-Lemus C., Ané C., Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting, PLoS genetics, 12(3) (2016) e1005896.
Öz
Phylogenetic trees describe evolution but due to hybridization events, recombination events or lateral gene transfer, it can be represented as a phylogenetic network. In phylogenetic networks, some of the branches of tree combine and create a reticulation node. Level of a network is decided to look at how many nodes in a connected component in a network. In this research, Int this paper, the structure of directed and undirected level-2 networks and how the can be decomposed into level-2 generators is studied..
Anahtar Kelimeler
Mathematical Biology Phylogenetics Phylogenetic network Biostatistics
Kaynakça
- [1] Gambette P., Berry V., Paul C., The structure of level-k phylogenetic networks, Annual Symposium on Combinatorial Pattern Matching Springer, Berlin, Heidelberg, (2009, June). 289-300.
- [2] Jansson J., Sung W. K., Inferring a level-1 phylogenetic network from a dense set of rooted triplets, Theoretical Computer Science, 363(1) (2006) 60-68.
- [3] Van Iersel L., Keijsper J., Kelk S., Stougie L., Hagen F., Boekhout T., Constructing level-2 phylogenetic networks from triplets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(4) (2009) 667-681.
- [4] Gross E., Long C., Distinguishing phylogenetic networks. SIAM Journal on Applied Algebra and Geometry, 2(1) (2018) 72-93.
- [5] Huber K. T., Moulton V., Semple C., Wu T., Quarnet inference rules for level-1 networks, Bulletin of Mathematical Biology, 80(8) (2018) 2137-2153.
- [6] Huebler S., Morris R., Rusinko J., Tao Y. Constructing semi-directed level-1 phylogenetic networks from quarnets, (2019) arXiv preprint arXiv:1910.00048.
- [7] Solís-Lemus C., Ané C., Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting, PLoS genetics, 12(3) (2016) e1005896.
Ayrıntılar
| Birincil Dil | İngilizce |
|---|---|
| Konular | Yapısal Biyoloji , Matematik, İstatistik |
| Bölüm | Natural Sciences |
| Yazarlar | |
| Yayımlanma Tarihi | 26 Mart 2023 |
| Gönderilme Tarihi | 10 Şubat 2022 |
| Kabul Tarihi | 13 Kasım 2022 |
| Yayımlandığı Sayı | Yıl 2023Cilt: 44 Sayı: 1 |
