Could Momordica Charantia Be Effective In The Treatment of COVID19?
Year 2022,
, 211 - 220, 29.06.2022
Burak Tüzün
,
Koray Sayin
,
Hilmi Ataseven
Abstract
One of the deadliest diseases is the SARS-CoV-2 virus, today. The rate of spread of this virus is very high. Momordica Charantia extracts studied for this virus. The inhibitory activities of 96 components in the extract of Momordica Charantia were compared against the SARS-CoV-2 virus. Molecular docking method was initially used for this comparison. ADME/T analysis of the inhibitors with the highest inhibitory activity was performed using the results obtained from these calculations. The molecular docking calculations of the molecule with the highest inhibitory activity were tried to be supported by MM-PBSA calculations. The molecular mechanics Poisson-Boltzmann surface binding free energy values of area (MM-PBSA) calculations study interactions between inhibitor molecules and SARS-CoV-2 virus proteins at 100 ps. Finally, the molecules with the highest inhibitory activity were compared with FDA approved drugs. As a result of the made molecular docking calculations, the docking score parameter is Karaviloside III with -9.36, among the extracts of momordica charantia, which has the most negative value. The Gibbs free energy value of the Karaviloside III against 6X6P protein with the best docking score value was calculated. This value is -477143.61±476.53. As a result of the comparison of inhibitory activities of extracts of Momordica charantia against SARS-CoV-2 virus, it has been observed that the Karaviloside III molecule has higher inhibitory activity than other melodies and FDA drugs.
Supporting Institution
sivas cumhuriyet üniversite
Thanks
This work is supported by the Scientific Research Project Fund of Sivas Cumhuriyet University under the project number RGD-020. This research was made possible by TUBITAK ULAKBIM, High Performance, and Grid Computing Center (TR-Grid e-Infrastructure).
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Year 2022,
, 211 - 220, 29.06.2022
Burak Tüzün
,
Koray Sayin
,
Hilmi Ataseven
References
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- [35] Lipinski C. A., Lombardo F., Dominy B. W., Feeney P. J., Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings, Advanced Drug Delivery Reviews, 23 (1997) 3-25.
- [36] Jorgensen W.J., Duffy E.M., Prediction of drug solubility from structure, Advanced Drug Delivery Reviews, 54(3) (2002) 355-366.
- [37] Kısa D., Korkmaz N., Taslimi P., Tuzun B., Tekin Ş., Karadag A., Şen F., Bioactivity and Molecular Docking Studies of Some Nickel Complexes: New Analogues for the Treatment of Alzheimer, Glaucoma and Epileptic Diseases, Bioorganic Chemistry, (2020) 104066.
- [38] Türkan F., Taslimi P., Abdalrazaq S. M., Aras A., Erden Y., Celebioglu H. U., et al., Determination of anticancer properties and inhibitory effects of some metabolic enzymes including acetylcholinesterase, butyrylcholinesterase, alpha glycosidase of some compounds with molecular docking study, Journal of Biomolecular Structure and Dynamics, (2020) 1-17.
- [39] Alici E.H., Bilgiçli A.T., Tüzün B., Günsel A., Arabaci G., Yarasir M.N., Alkyl chain modified metalophthalocyanines with enhanced antioxidant-antimicrobial properties by doping Ag+ and Pd2+ ions, Journal of Molecular Structure, 1257 (2022) 132634.
- [40] Erdogan M.K., Gundogdu R., Yapar Y., Gecibesler I.H., Kirici M., Behcet L., ... Taslimi P., The Evaluation of Anticancer, Antioxidant, Antidiabetic and Anticholinergic Potentials of Endemic Rhabdosciadium microcalycinum Supported by Molecular Docking Study, ChemistrySelect, 7(17) (2022) e202200400.
- [41] Majumdar D., Tüzün B., Pal T.K., Das S., Bankura K., Architectural View of Flexible Aliphatic–OH Group Coordinated Hemi-Directed Pb (II)-Salen Coordination Polymer: Synthesis, Crystal Structure, Spectroscopic Insights, Supramolecular Topographies, and DFT Perspective, Journal of Inorganic and Organometallic Polymers and Materials, (2022) 1-18.
- [42] Shafiee S., Davaran S., A mini-review on the current COVID-19 therapeutic strategies, Chemical Review and Letters, 3(1) (2020) 19-22.
- [43] Majedi S., Majedi S., Existing drugs as treatment options for COVID-19: A brief survey of some recent results, Journal of Chemistry Letters, 1(1) (2020) 2-8.
- [44] Aktaş A., Tüzün B., Aslan R., Sayin K., Ataseven H., New anti-viral drugs for the treatment of COVID-19 instead of favipiravir, Journal of Biomolecular Structure and Dynamics, 39(18) (2021) 7263-7273.
- [45] Ataseven H., Sayin K., Tüzün B., Gedikli M., Could boron compounds be effective against SARS-CoV-2?, Bratislava Medical Journal-Bratislavske Lekarske Listy, 122(10) (2021) 753-758.
- [46] Tuzun B., Nasibova T., Garaev E., Sayin K., Ataseven H. Could Peganum harmala be effective in the treatment of COVID-19?, Bratislavske Lekarske Listy, 122(9) (2021) 670-679.
- [47] Gedikli M.A., Tuzun B., Sayin K., Ataseven H., Determination of inhibitor activity of drugs against the COVID-19, Bratislavske Lekarske Listy, 122(7) (2021) 497-506.
- [48] Cetiner E., Sayin K., Tuzun B., Ataseven H., Could boron-containing compounds (BCCs) be effective against SARS-CoV-2 as anti-viral agent?, Bratislavske Lekarske Listy, 122(4) (2021) 263-269.
- [49] Gedikli M., Tuzun, B., Aktas A., Sayin K., Ataseven H., Are clarithromycin, azithromycin and their analogues effective in the treatment of COVID19, Bratislava Medical Journal-Bratislavske Lekarske Listy, 122(2) (2021) 101-110.