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Year 2023, Volume: 6 Issue: 3, 326 - 331, 01.05.2023

Bora Bayhan Nurettin Baran

https://doi.org/10.47115/bsagriculture.1265206

Abstract

References

  • Adhikari S, Saha S, Biswas A, Rana TS, Bandyopadhyay TK, Ghosh P. 2017. Application of molecular markers in plant genome analysis: a review. Nucleus, 60(3): 283-297.
  • Akinyemi BT, Okukenu OA, Dele PA, Kalenikanse OB, Wheto M, Sanda F, Jolaosho AO. 2021. Genetic diversity of andropogon species with different microsatellite markers for better selection and improvement. Nigerian J Biotechnol, 38(2): 109-117.
  • Amundsen K, Warnke S. 2011. Species relationships in the genus Agrostis based on flow cytometry and MITE‐display molecular markers. Crop Sci, 51(3): 1224-1231.
  • Bebawi FF, Campbell SD, Mayer RJ. 2018. Gamba grass (Andropogon gayanus Kunth.) seed persistence and germination temperature tolerance. The Rangeland J, 40(5): 463-472.
  • Cabi E, Doğan M. 2012. Poaceae, Türkiye bitkileri listesi. Istanbul Nezahat Gökyiğit Botanik Bahçesi ve Flora Araş Dern Yay, 2012: 690-756.
  • Céccoli G, Ramos J, Pilatti V, Dellaferrera I, Tivano JC, Taleisnik E, Vegetti AC. 2015. Salt glands in the Poaceae family and their relationship to salinity tolerance. Botanical Rev, 81(2): 162-178.
  • Chirivì D, Betti C. 2023. Molecular links between flowering and abiotic stress response: A Focus on Poaceae. Plants, 12(2): 331.
  • Cidade FW, Vigna BB, De Souza FH, Valls JFM, Dall’Agnol M, Zucchi MI, Souza AP. 2013. Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalumgenus. BMC Genetics, 14(1): 1-19.
  • Cook BG, Pengelly BC, Brown SD, Donnelly JL, Eagles DA, Franco M A, Schultze-Kraft R. 2005. Tropical Forages: an interactive selection tool. Tropical Forages: an interactive selection tool. CSIRO, Brispane, Australia.
  • Dell'Acqua M, Fricano A, Gomarasca S, Caccianiga M, Piffanelli P, Bocchi S, Gianfranceschi L. 2014. Genome scan of Kenyan Themeda triandra populations by AFLP markers reveals a complex genetic structure and hints for ongoing environmental selection. South African J Botany, 92: 28-38.
  • Dell'Acqua M, Gomarasca S, Porro A, Bocchi S. 2013. A tropical grass resource for pasture improvement and landscape management: Themeda triandra Forssk. Grass Forage Sci, 68(2): 205-215.
  • Ennos RA. 1999. Using organelle markers to elucidate the history, ecology and evolution of plant populations. Mol Syst Plant Evolut, 57: 1-19.
  • Gabbard BL, Fowler NL. 2007. Wide ecological amplitude of a diversity- reducing invasive grass. Biol Invas, 9(2): 149-160.
  • Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK. 2010. Implications of the plastid genome sequence of Typha (Typhaceae, Poales) for understanding genome evolution in Poaceae. J Mol Evol, 70(2): 149-166.
  • Honig JA, Kubik C, Averello V, Vaiciunas J, Meyer WA, Bonos SA. 2016. Classification of bentgrass (Agrostis) cultivars and accessions based on microsatellite (SSR) markers. Genetic Res Crop Evol, 63(7): 1139-1160.
  • Idrees M, Irshad M. 2014. Molecular markers in plants for analysis of genetic diversity: a review. European Acad Res, 2(1): 1513-1540.
  • Kovi MR, Pashapu AR, Amdahl H, Alsheikh M, Marum P, Rognli OA. 2021. Impact of genetic relatedness on the genomic prediction accuracies in timothy (Phleum pratense L.). 34th Meeting of the EUCARPIA Fodder Crops and Amenity Grasses Section in cooperation with the EUCARPIA Festulolium Working Group. September 06-08, 2021, Freising, Germany, pp: 109-116.
  • Landi S, Hausman JF, Guerriero G, Esposito S. 2017. Poaceae vs. abiotic stress: focus on drought and salt stress, recent insights and perspectives. Front Plant Sci, 8: 1214.
  • Loch DS, Rethman NF, Van Niekerk WA. 2004. Rhodesgrass. Warm‐Season (C4) Grasses, 45: 833-872.
  • Matakis S, Overath RD, Kutil B, Pepper AE, Manhart JR. 2011. Isolation and characterization of microsatellite markers for Bothriochloa ischaemum (Poaceae). American J Botany, 98(7): e192-e194.
  • Meng L. Yang HX, Mao PC, Gao HW, Sun FD. 2011. Analysis of genetic diversity in arrhenatherum elatius germplasm using inter-simple sequence repeat (ISSR) markers. African J Biotechnol, 10(38): 7330-7341.
  • Michalski SG, Durka W, Jentsch A, Kreyling J, Pompe S, Schweiger O, Beierkuhnlein C. 2010. Evidence for genetic differentiation and divergent selection in an autotetraploid forage grass (Arrhenatherum elatius). Theor App Genet, 120(6): 1151-1162.
  • Negawo AT, Muktar MS, Assefa Y., Hanson J, Sartie AM, Habte E, Jones CS. 2021. Genetic diversity and population structure of a Rhodes grass (Chloris gayana) collection. Genes, 12(8): 1233.
  • Patwardhan A, Ray S, Roy A. 2014. Molecular markers in phylogenetic studies- a review. J Phylogen Evol Biol, 2: 131.
  • Poczai P, Varga I, Laos M, Cseh A, Bell N, Valkonen J, Hyvönen J. 2013. Advances in plant gene-targeted and functional markers: a review. Plant Methods, 9(1): 1-32.
  • Ribotta AN, Griffa SM, Díaz D, Carloni EJ, Colomba EL, Tommasino EA, Grunberg K. 2013. Selecting salt-tolerant clones and evaluating genetic variability to obtain parents of new diploid and tetraploid germplasm in rhodesgrass (Chloris gayana K.). South African J Botany, 84: 88-93.
  • Silveira DC, Machado JM, Motta EA M D, Barbosa MR, Simioni C, Weiler RL, Dall’Agnol M. 2022. Genetic parameters, prediction of gains and intraspecific hybrid selection of Paspalum notatum Flügge for forage using REML/BLUP. Agronomy, 12(7): 1654.
  • Smith JD, Jackson N, Woolhouse AR. 1989. Fungal diseases of amenity turf grasses. E. & FN Spon, London, UK.
  • Taleisnik E, Salgado M, Bonafede MD, Manghers LE, Pérez H, García Seffino L, Diaz DG. 2021. Searching for Molecular Markers for Salt Tolerance in Rhodes Grass (Chloris gayana Kunth). The XIX International Grassland Congress, February 11- 21, 2021, São Pedro, Brazil, ID: 12-11.
  • Tanaka T, Tamaki H, Ashikaga K, Fujii H, Tamura KI, Yamada T. 2015. Use of SSR markers to increase forage yield in Timoty (Phleum pratense L.). Springer, Belin, Germany, pp: 131-142.
  • Tanhuanpää P, Isolahti M, Oiva N, Manninen O. 2016. DNA markers for Typhula resistance in timothy (Phleum pratense L.). Agri Food Sci, 25(3): 146-152.
  • Tondelli A, Francia E, Barabaschi D, Pasquariello M, Pecchioni N. 2011. Inside the CBF locus in Poaceae. Plant Sci, 180(1): 39-45.
  • USDA-NRSC. 2002. United states department of agriculture (usda), national resource conservation service (NRCS). Plant Fact Sheet on Andropogon gerardii vitman. URL: https://www.nrcs.usda.gov/plantmaterials/txpmcrb12053. (access date: January 12, 2023).
  • Warnke S, Casler MD, Duncan RR. 2003. Creeping bentgrass (Agrostis stolonifera L.). Turfgrass Biol Genet Breeding, 2003: 175-185.
  • Williams P, Watson P, Kington D, Collins E. 2022. Frequently burnt subtropical eucalypt forest is more resilient to wildfire than rarely burnt forest. Proc Royal Soc Queensland, 131: 51-61.
  • Zapiola ML, Cronn RC, Mallory-Smith CA. 2010. Development of novel chloroplast microsatellite markers to identify species in the Agrostis complex (Poaceae) and related genera. Mol Ecol Res, 10(4): 738-740.

Analysis of Selected Marker Studies on Minor Poaceae Forages

Year 2023, Volume: 6 Issue: 3, 326 - 331, 01.05.2023

Bora Bayhan Nurettin Baran

https://doi.org/10.47115/bsagriculture.1265206

Abstract

Pastures are very important for agriculture since the main feeding source of the enormous cattle herd in the world is forage. Pastures comprise plants from several genera of grasses and legumes. In terms of the physical variety, ecology, and economic significance, the Poaceae is among the most significant families of Angiosperms. Regarding stress tolerance, species within this family exhibit a very wide range of variation. In recent years, the importance of using molecular markers in phylogenetic analyses of numerous organisms has increased. The development of genomic technologies and infrastructure has progressed sufficiently for their use in marker- aided selection (MAS) to be studied in several important perennial fodder species. Differences can be directly attributed to minor variations in the genetic code such as phenotype, single sequence repeats (SSRs), and single nucleotide polymorphisms (SNPs). Therefore, breeders can benefit significantly from developing and characterizing new genetic markers. This paper gives a brief analysis of some international studies on some minor Poacea forages.

Keywords

Markers Forages Poaceae Minor

References

  • Adhikari S, Saha S, Biswas A, Rana TS, Bandyopadhyay TK, Ghosh P. 2017. Application of molecular markers in plant genome analysis: a review. Nucleus, 60(3): 283-297.
  • Akinyemi BT, Okukenu OA, Dele PA, Kalenikanse OB, Wheto M, Sanda F, Jolaosho AO. 2021. Genetic diversity of andropogon species with different microsatellite markers for better selection and improvement. Nigerian J Biotechnol, 38(2): 109-117.
  • Amundsen K, Warnke S. 2011. Species relationships in the genus Agrostis based on flow cytometry and MITE‐display molecular markers. Crop Sci, 51(3): 1224-1231.
  • Bebawi FF, Campbell SD, Mayer RJ. 2018. Gamba grass (Andropogon gayanus Kunth.) seed persistence and germination temperature tolerance. The Rangeland J, 40(5): 463-472.
  • Cabi E, Doğan M. 2012. Poaceae, Türkiye bitkileri listesi. Istanbul Nezahat Gökyiğit Botanik Bahçesi ve Flora Araş Dern Yay, 2012: 690-756.
  • Céccoli G, Ramos J, Pilatti V, Dellaferrera I, Tivano JC, Taleisnik E, Vegetti AC. 2015. Salt glands in the Poaceae family and their relationship to salinity tolerance. Botanical Rev, 81(2): 162-178.
  • Chirivì D, Betti C. 2023. Molecular links between flowering and abiotic stress response: A Focus on Poaceae. Plants, 12(2): 331.
  • Cidade FW, Vigna BB, De Souza FH, Valls JFM, Dall’Agnol M, Zucchi MI, Souza AP. 2013. Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalumgenus. BMC Genetics, 14(1): 1-19.
  • Cook BG, Pengelly BC, Brown SD, Donnelly JL, Eagles DA, Franco M A, Schultze-Kraft R. 2005. Tropical Forages: an interactive selection tool. Tropical Forages: an interactive selection tool. CSIRO, Brispane, Australia.
  • Dell'Acqua M, Fricano A, Gomarasca S, Caccianiga M, Piffanelli P, Bocchi S, Gianfranceschi L. 2014. Genome scan of Kenyan Themeda triandra populations by AFLP markers reveals a complex genetic structure and hints for ongoing environmental selection. South African J Botany, 92: 28-38.
  • Dell'Acqua M, Gomarasca S, Porro A, Bocchi S. 2013. A tropical grass resource for pasture improvement and landscape management: Themeda triandra Forssk. Grass Forage Sci, 68(2): 205-215.
  • Ennos RA. 1999. Using organelle markers to elucidate the history, ecology and evolution of plant populations. Mol Syst Plant Evolut, 57: 1-19.
  • Gabbard BL, Fowler NL. 2007. Wide ecological amplitude of a diversity- reducing invasive grass. Biol Invas, 9(2): 149-160.
  • Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK. 2010. Implications of the plastid genome sequence of Typha (Typhaceae, Poales) for understanding genome evolution in Poaceae. J Mol Evol, 70(2): 149-166.
  • Honig JA, Kubik C, Averello V, Vaiciunas J, Meyer WA, Bonos SA. 2016. Classification of bentgrass (Agrostis) cultivars and accessions based on microsatellite (SSR) markers. Genetic Res Crop Evol, 63(7): 1139-1160.
  • Idrees M, Irshad M. 2014. Molecular markers in plants for analysis of genetic diversity: a review. European Acad Res, 2(1): 1513-1540.
  • Kovi MR, Pashapu AR, Amdahl H, Alsheikh M, Marum P, Rognli OA. 2021. Impact of genetic relatedness on the genomic prediction accuracies in timothy (Phleum pratense L.). 34th Meeting of the EUCARPIA Fodder Crops and Amenity Grasses Section in cooperation with the EUCARPIA Festulolium Working Group. September 06-08, 2021, Freising, Germany, pp: 109-116.
  • Landi S, Hausman JF, Guerriero G, Esposito S. 2017. Poaceae vs. abiotic stress: focus on drought and salt stress, recent insights and perspectives. Front Plant Sci, 8: 1214.
  • Loch DS, Rethman NF, Van Niekerk WA. 2004. Rhodesgrass. Warm‐Season (C4) Grasses, 45: 833-872.
  • Matakis S, Overath RD, Kutil B, Pepper AE, Manhart JR. 2011. Isolation and characterization of microsatellite markers for Bothriochloa ischaemum (Poaceae). American J Botany, 98(7): e192-e194.
  • Meng L. Yang HX, Mao PC, Gao HW, Sun FD. 2011. Analysis of genetic diversity in arrhenatherum elatius germplasm using inter-simple sequence repeat (ISSR) markers. African J Biotechnol, 10(38): 7330-7341.
  • Michalski SG, Durka W, Jentsch A, Kreyling J, Pompe S, Schweiger O, Beierkuhnlein C. 2010. Evidence for genetic differentiation and divergent selection in an autotetraploid forage grass (Arrhenatherum elatius). Theor App Genet, 120(6): 1151-1162.
  • Negawo AT, Muktar MS, Assefa Y., Hanson J, Sartie AM, Habte E, Jones CS. 2021. Genetic diversity and population structure of a Rhodes grass (Chloris gayana) collection. Genes, 12(8): 1233.
  • Patwardhan A, Ray S, Roy A. 2014. Molecular markers in phylogenetic studies- a review. J Phylogen Evol Biol, 2: 131.
  • Poczai P, Varga I, Laos M, Cseh A, Bell N, Valkonen J, Hyvönen J. 2013. Advances in plant gene-targeted and functional markers: a review. Plant Methods, 9(1): 1-32.
  • Ribotta AN, Griffa SM, Díaz D, Carloni EJ, Colomba EL, Tommasino EA, Grunberg K. 2013. Selecting salt-tolerant clones and evaluating genetic variability to obtain parents of new diploid and tetraploid germplasm in rhodesgrass (Chloris gayana K.). South African J Botany, 84: 88-93.
  • Silveira DC, Machado JM, Motta EA M D, Barbosa MR, Simioni C, Weiler RL, Dall’Agnol M. 2022. Genetic parameters, prediction of gains and intraspecific hybrid selection of Paspalum notatum Flügge for forage using REML/BLUP. Agronomy, 12(7): 1654.
  • Smith JD, Jackson N, Woolhouse AR. 1989. Fungal diseases of amenity turf grasses. E. & FN Spon, London, UK.
  • Taleisnik E, Salgado M, Bonafede MD, Manghers LE, Pérez H, García Seffino L, Diaz DG. 2021. Searching for Molecular Markers for Salt Tolerance in Rhodes Grass (Chloris gayana Kunth). The XIX International Grassland Congress, February 11- 21, 2021, São Pedro, Brazil, ID: 12-11.
  • Tanaka T, Tamaki H, Ashikaga K, Fujii H, Tamura KI, Yamada T. 2015. Use of SSR markers to increase forage yield in Timoty (Phleum pratense L.). Springer, Belin, Germany, pp: 131-142.
  • Tanhuanpää P, Isolahti M, Oiva N, Manninen O. 2016. DNA markers for Typhula resistance in timothy (Phleum pratense L.). Agri Food Sci, 25(3): 146-152.
  • Tondelli A, Francia E, Barabaschi D, Pasquariello M, Pecchioni N. 2011. Inside the CBF locus in Poaceae. Plant Sci, 180(1): 39-45.
  • USDA-NRSC. 2002. United states department of agriculture (usda), national resource conservation service (NRCS). Plant Fact Sheet on Andropogon gerardii vitman. URL: https://www.nrcs.usda.gov/plantmaterials/txpmcrb12053. (access date: January 12, 2023).
  • Warnke S, Casler MD, Duncan RR. 2003. Creeping bentgrass (Agrostis stolonifera L.). Turfgrass Biol Genet Breeding, 2003: 175-185.
  • Williams P, Watson P, Kington D, Collins E. 2022. Frequently burnt subtropical eucalypt forest is more resilient to wildfire than rarely burnt forest. Proc Royal Soc Queensland, 131: 51-61.
  • Zapiola ML, Cronn RC, Mallory-Smith CA. 2010. Development of novel chloroplast microsatellite markers to identify species in the Agrostis complex (Poaceae) and related genera. Mol Ecol Res, 10(4): 738-740.
There are 36 citations in total.

Details

Primary Language English
Subjects Agricultural Engineering
Journal Section Reviews
Authors

Bora Bayhan 0000-0002-6555-5272

Nurettin Baran 0000-0003-2212-3274

Early Pub Date April 30, 2023
Publication Date May 1, 2023
Submission Date March 14, 2023
Acceptance Date April 28, 2023
Published in Issue Year 2023 Volume: 6 Issue: 3

Cite

APA Bayhan, B., & Baran, N. (2023). Analysis of Selected Marker Studies on Minor Poaceae Forages. Black Sea Journal of Agriculture, 6(3), 326-331. https://doi.org/10.47115/bsagriculture.1265206
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